Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015864719.1_cds_XP_016516080.1_28359
CDS Infomation

[gene=LOC107832729] [db_xref=GeneID:107832729] [protein=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like] [protein_id=XP_016516080.1] [location=complement(join(196696..196938,197438..197784,198065..198246,198780..199822))] [gbkey=CDS]
Sequence

ATGGACGTTCGCCGGCGACCTGTCAAACCCTTTTACCCTTCCAAAGATGACGTTTCCGCC
GGCGAATCTCTCAAACCCCACAAACAAACCCAACAAGTTTCCTCTCCCAAAGCATCTGAT
GCCCTTCCACTCCCATTGTATCTCACCAATGGTTTATTTTTCACCATGTTTTTCTCTGTC
ATGTATTTCCTTCTCGTCAGGTGGCGTGAGAAGATCCGTAATTCGACGCCTCTCCATATG
GTTACCCTTTCTGAATTGGTCGCTATGGTTTCATTGATCGCTTCCGTTATATATCTGTTG
GGCTTTTTTGGCATCGGATTTGTTCAGTCTTTTGTCTCAAGGTCCAACAGTGATTCCTGG
GATGTTGAAGATGAGAATACTGAGCAGTTTATTATTGAGGAAGATAGCCGCCGTGGACCA
TGTGCTGCAGCAACTACTCTCGGCTGCGCTGTACCCCCACCATCTGCTCGACAAATAGTC
CCAATGGTTCCACAGCAACCTGCTAAGGTAGCTTTAGCCGTTGCGGAAAAGCCTGCACCC
ATAATTACACCAGCAGTGTCCGAGGATGACGAGGAGATTATACAATCTGTTGTTCAGGGT
AAAACACCGTCTTATTCCTTGGAATCGAAGCTTGCTGATTGCAAAAGAGCTGCTTCTGTT
CGTAGAGAGGCGTTGCAGAGGATTACAGGGAAGTCATTGGAAGGGCTACCGTTGGAGGGA
TTTGATTATGAGTCTATTCTTGGACAGTGCTGTGAGATGCCTGTAGGATACGTGCAGATA
CCCGTGGGAATTGCGGGGCCTTTGTTGCTTGATGGGAGAGAGTATTCGGTGCCAATGGCA
ACGACGGAAGGATGTTTAGTGGCTAGCACCAACAGGGGTTGCAAGGCAATCTTTGCTTCC
GGTGGCGCCATTAGTGTGTTGCTCAGAGATGGGATGACAAGAGCTCCTGTGGTCAGGTTC
GCCACCGCGAAAAGGGCTGCGGAGTTGAAGTTCTTCGTTGAGGATCCCTTGAATTTTGAG
ACTCTGTCACTTGTTTTCAACAAATCAAGCAGATTTGCCAGATTACAGAGCATTCAATGT
GCTATAGCTGGTAAGAATCTGTATATGAGATTTAGCTGTAGCACTGGTGATGCAATGGGA
ATGAACATGGTGTCCAAAGGTGTGCAAAACGTTCTGGATTACCTTCAAAATGAATATCCC
GACATGGACGTCATCGGCATATCTGGGAACTTTTGCTCGGACAAGAAGCCTGCAGCAGTT
AACTGGATTGAGGGGAGAGGAAAATCGGTAGTTTGCGAGGCAATTATCACGGAAGAGGTG
GTGAAGAAAGTCTTGAAAACAGAGGTTGCTTCTCTGGTGGAGCTGAACGTGCTTAAGAAC
CTTACTGGTTCAGCCATGGCTGGTGCCCTTGGTGGCTTCAATGCCCATGCCAGTAACATC
GTCTCCGCTGTATATCTAGCCACTGGTCAGGACCCTGCTCAAAATGTTGAGAGTTCTCAC
TGCATCACTATGATAGAGGCTGTAAATGATGGCAAAGACCTCCATATTTCAGTAACTATG
CCTTCTATTGAGGTTGGCACAGTTGGTGGTGGAACTCAACTTGCATCACAGTCAGCTTGC
TTGAACTTATTAGGAGTGAAAGGTGCAAACAGGGAGGCAGCAGGGTCAAATGCAAGGCTC
TTGGCCACAATAGTAGCAGGTTCTGTTCTTGCTGGTGAGTTATCTCTCATGTCTGCTATC
TCAGCAGGGCAGCTGGTTAAGAGTCACATGAAATACAATAGATCTAGCAAAGATGTTACT
AAGATTTCCTCTTAG

Peptide Sequence

PEP ID

XP_016516080.1
PEP Infomation

PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Nicotiana tabacum]
Sequence

MDVRRRPVKPFYPSKDDVSAGESLKPHKQTQQVSSPKASDALPLPLYLTNGLFFTMFFSV
MYFLLVRWREKIRNSTPLHMVTLSELVAMVSLIASVIYLLGFFGIGFVQSFVSRSNSDSW
DVEDENTEQFIIEEDSRRGPCAAATTLGCAVPPPSARQIVPMVPQQPAKVALAVAEKPAP
IITPAVSEDDEEIIQSVVQGKTPSYSLESKLADCKRAASVRREALQRITGKSLEGLPLEG
FDYESILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIFAS
GGAISVLLRDGMTRAPVVRFATAKRAAELKFFVEDPLNFETLSLVFNKSSRFARLQSIQC
AIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDYLQNEYPDMDVIGISGNFCSDKKPAAV
NWIEGRGKSVVCEAIITEEVVKKVLKTEVASLVELNVLKNLTGSAMAGALGGFNAHASNI
VSAVYLATGQDPAQNVESSHCITMIEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSAC
LNLLGVKGANREAAGSNARLLATIVAGSVLAGELSLMSAISAGQLVKSHMKYNRSSKDVT
KISS

Transcript Sequence

Gene sequence data has not been registered.